popv.visualization.make_agreement_plots

popv.visualization.make_agreement_plots(adata, prediction_keys, popv_prediction_key='popv_prediction', save_folder=None, show=True)

Create plot of confusion matrix for different popv methods and consensus prediction.

Parameters:

• adata – AnnData object.

• prediction_keys (list) – List with key for methods for which confusion matrix is computed.

• popv_prediction_key (str | None (default: 'popv_prediction')) – Key in adata.obs for consensus prediction.

• save_folder (str | None (default: None)) – Path to a folder for storing the plot. Defaults to None and plot is not stored.

• show (bool (default: True)) – If True, the plot will be shown in the console. If False, the plot will not be shown.

Returns:

Returns axis of corresponding plot.