popv.algorithms.BaseAlgorithm

popv.algorithms.BaseAlgorithm#

class popv.algorithms.BaseAlgorithm(batch_key='_batch_annotation', labels_key='_labels_annotation', seen_result_key=None, result_key=None, embedding_key=None, umap_key=None)[source]#

`compute_integration`(adata)	Compute integration of adata inplace.
`compute_umap`(adata)	Compute UMAP embedding of adata inplace.
`predict`(adata)	Predicts cell type of adata inplace.

abstractmethod BaseAlgorithm.compute_integration(adata)[source]#: Compute integration of adata inplace.

abstractmethod BaseAlgorithm.compute_umap(adata)[source]#: Compute UMAP embedding of adata inplace.

abstractmethod BaseAlgorithm.predict(adata)[source]#: Predicts cell type of adata inplace.