popv.hub.create_criticism_report

popv.hub.create_criticism_report(adata=None, label_key='_reference_labels_annotation', save_folder=None)

Compute and store accuracy metrics for a model.

Parameters:

• adata (AnnData | None (default: None)) – AnnData to compute metrics on.

• label_key (str | None (default: '_reference_labels_annotation')) – Key in adata.obs to use as cell type labels. If None, will use the original label key from the model.

• save_folder (str | None (default: None)) – Path to folder for storing the metrics. Preferred to store in save_path folder of model.

Return type:

dict